PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26833s0575.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GATA
Protein Properties Length: 397aa    MW: 44390.5 Da    PI: 9.0399
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26833s0575.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA603e-19229262134
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                           Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  Bostr.26833s0575.1.p 229 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 262
                           *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.1E-20223275IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-13224262No hitNo description
Gene3DG3DSA:3.30.50.102.0E-15227262IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.466227259IPR000679Zinc finger, GATA-type
CDDcd002027.88E-15228260No hitNo description
PfamPF003205.8E-17229262IPR000679Zinc finger, GATA-type
PROSITE patternPS003440229254IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010255Biological Processglucose mediated signaling pathway
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MDSNFHYSID LNEDQNHHEQ PFFYPLGSSS SLLHHHHQVP SNSSSSSSSI SSLSSYLPLL  60
INSQEDQHVA YNNTYHADHL HLSQPLKAKM FVANGGSSSS YDHMVPKKET RLKLTIRKKD  120
HEDQTDPLHQ NPTKPDSDSD KWLMSPKMRL IKKTITNNNQ PTIQTNNNNH KRNDHYPLNH  180
KTNFDEDQDE DLNLKKVLTR TTTAATTENR YNTINEIGYG NNNGVIRVCS DCNTTKTPLW  240
RSGPRGPKSL CNACGIRQRK ARRAAMAAAA AAGDQEVAVA SRVQQLPLKK KLQNKKKRSN  300
YGGEKYNLSP PVVAKAKKCK IKEEEEKEME AETVAGDSEI SKSTTSSNSS ISSNKFCFDD  360
LTIMLSKSSA YQQVFPQDEK EAAILLMALS YGMVHG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0889530.0AY088953.1 Arabidopsis thaliana clone 110454 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280600.10.0hypothetical protein CARUB_v10026556mg
SwissprotQ5HZ360.0GAT21_ARATH; GATA transcription factor 21
TrEMBLR0GQS50.0R0GQS5_9BRAS; Uncharacterized protein
STRINGAT5G56860.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21092675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.11e-167GATA family protein